Bioinformatics Tools & Projects
Explore a collection of tools and projects developed for DNA sequence analysis and bioinformatics research.
Conservation & Entropy Analyzer: Upload or paste FASTA sequences, align, and visualize nucleotide/k-mer conservation and entropy.
Key Features: FASTA input, alignment, conservation & entropy visualization.
Relevance: Comparative genomics, identifying functional regions.
A versatile tool for the analysis of GenBank records.
Key Features: GenBank file parsing, data extraction, sequence manipulation.
Relevance: Facilitates working with GenBank database.
Efficient Classification of DNA Microsatellites Using a Hybrid CNN-RNN Model.
Key Features: Deep learning, microsatellite classification.
Relevance: ML for identifying repetitive DNA elements.
Representing DNA for Machine Learning Algorithms: A Primer on One-Hot, Binary, and Integer Encodings.
Key Features: Encoding methods explained, examples, educational.
Relevance: Foundational for applying ML to DNA sequences.
Jupyter notebook of alternative functions for nucleotide string analysis and plotting.
Key Features: Sequence statistics, GC content, plotting utilities.
Relevance: Practical examples for basic DNA analysis.
A quantum-inspired tensor network-based machine learning model to categorize cytochrome c oxidase subunit I (COI).
Key Features: Tensor network model, COI classification.
Relevance: Advanced ML for DNA barcode-based species ID.